PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA07G0180200.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 265aa    MW: 29705.3 Da    PI: 7.3047
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA07G0180200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH162.2e-053675144
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHH CS
                HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiL 44
                       +r  ++erE+  Rd+ N+ f+eL  ll ++     + + Ka +L
  ORGLA07G0180200.1 36 KRIHKSEREKLKRDKQNDLFNELGNLLEPD----RQNNGKACVL 75
                       68899**********************996....3444555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-1132104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-832104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.2043585IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MVPRDRVNAA AAGGGGEGRL VQSGIVNKKC DKKAPKRIHK SEREKLKRDK QNDLFNELGN  60
LLEPDRQNNG KACVLGETTR LLKDLLSQVE SLRKENSSLK NESHYVALER NELHDDNSML  120
RTEILELQNE LRTRMEGNPV WSHVNTRPAL RVPYPTTGVF PVQHLPHLPV TTTAAFPQQQ  180
PVIIEQHYAA MPRELQLFPE SATSEDSEPS QEHGISDHVT RPQARYPTPT ATLPVNLFPV  240
FPGRQDQQCS SGTSGTNEED RIGRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0709630.0AK070963.1 Oryza sativa Japonica Group cDNA clone:J023068N18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645393.10.0PREDICTED: transcription factor bHLH47
RefseqXP_015645392.10.0PREDICTED: transcription factor bHLH47
RefseqXP_015645391.10.0PREDICTED: transcription factor bHLH47
TrEMBLI1QCG00.0I1QCG0_ORYGL; Uncharacterized protein
STRINGORGLA07G0180200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24813884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.31e-34bHLH family protein